{
  "_id": "6a22abe30ef520ea2f58bd3b",
  "Package": "stockR",
  "Title": "Identifying Stocks in Genetic Data",
  "Version": "1.0.76",
  "Authors@R": "c(person(\"Scott D.\", \"Foster\", role = c(\"aut\", \"cre\"),\nemail = \"scott.foster@data61.csiro.au\"))",
  "Author": "Scott D. Foster [aut, cre]",
  "Description": "Provides a mixture model for clustering individuals (or\nsampling groups) into stocks based on their genetic profile.\nHere, sampling groups are individuals that are sure to come\nfrom the same stock (e.g. breeding adults or larvae). The\nmixture (log-)likelihood is maximised using the EM-algorithm\nafter finding good starting values via a K-means clustering of\nthe genetic data. Details can be found in: Foster, S. D.;\nFeutry, P.; Grewe, P. M.; Berry, O.; Hui, F. K. C. & Davies\n(2020) <doi:10.1111/1755-0998.12920>.",
  "License": "GPL (>=2)",
  "VignetteBuilder": "knitr",
  "Repository": "https://scott-foster.r-universe.dev",
  "Date/Publication": "2023-04-26 07:16:12 UTC",
  "RemoteUrl": "https://github.com/scott-foster/stockr",
  "RemoteRef": "HEAD",
  "RemoteSha": "9953980affa103c33ca22101ba8e7baf47f87841",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-05 10:53:58 UTC",
    "User": "root"
  },
  "Maintainer": "Scott D. Foster <scott.foster@data61.csiro.au>",
  "MD5sum": "5bcd0c848b6b0975bb7ed0dbdfadd9d1",
  "_user": "scott-foster",
  "_type": "src",
  "_file": "stockR_1.0.76.tar.gz",
  "_fileid": "cc9bef939ebbe0530ff658f1866da54e88aa8eca53656274fa82763f35caa5f5",
  "_filesize": 941062,
  "_sha256": "cc9bef939ebbe0530ff658f1866da54e88aa8eca53656274fa82763f35caa5f5",
  "_created": "2026-06-05T10:53:58.000Z",
  "_published": "2026-06-05T10:58:43.018Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79713521901,
      "time": 117,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7434877656"
    },
    {
      "job": 79713521865,
      "time": 104,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7434872664"
    },
    {
      "job": 79713521864,
      "time": 100,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7434872437"
    },
    {
      "job": 79713521911,
      "time": 107,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7434873574"
    },
    {
      "job": 79713521867,
      "time": 78,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7434864976"
    },
    {
      "job": 79713521881,
      "time": 187,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7434896015"
    },
    {
      "job": 79713521854,
      "time": 97,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7434870530"
    },
    {
      "job": 79713521866,
      "time": 253,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7434914905"
    },
    {
      "job": 79713018118,
      "time": 215,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7434841962"
    },
    {
      "job": 79713521844,
      "time": 81,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7434866186"
    },
    {
      "job": 79713521887,
      "time": 96,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7434870288"
    },
    {
      "job": 79713521869,
      "time": 71,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7434863216"
    },
    {
      "job": 79713521875,
      "time": 79,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7434865402"
    }
  ],
  "_buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/scott-foster/stockr",
  "_commit": {
    "id": "9953980affa103c33ca22101ba8e7baf47f87841",
    "author": "Scott Foster <scott.foster@data61.csiro.au>",
    "committer": "Scott Foster <scott.foster@data61.csiro.au>",
    "message": "Making a few CRAN-related adjustments\n",
    "time": 1682493372
  },
  "_maintainer": {
    "name": "Scott D. Foster",
    "email": "scott.foster@data61.csiro.au",
    "login": "scott-foster",
    "description": "",
    "uuid": 20783981
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "gtools",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "RColorBrewer",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "scott-foster",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "scott-foster",
      "count": 2,
      "uuid": 20783981
    }
  ],
  "_userbio": {
    "uuid": 20783981,
    "type": "user",
    "name": "Scott-Foster"
  },
  "_downloads": {
    "count": 160,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/stockR"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/scott-foster/stockr",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/stockR.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/scott-foster/stockr",
  "_realowner": "scott-foster",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.68",
      "date": "2018-06-14"
    },
    {
      "version": "1.0.73",
      "date": "2020-02-06"
    },
    {
      "version": "1.0.74",
      "date": "2020-03-04"
    },
    {
      "version": "1.0.76",
      "date": "2023-04-26"
    }
  ],
  "_exports": [
    "calcFst",
    "plot.stockBOOT.object",
    "sim.stock.data",
    "stockBOOT",
    "stockSTRUCTURE"
  ],
  "_help": [
    {
      "page": "calcFst",
      "title": "Calculate Fst statistics for frequency data",
      "topics": [
        "calcFst"
      ]
    },
    {
      "page": "plot.stockBOOT",
      "title": "Plots results of a stockR analysis (a barplot-like representation)",
      "topics": [
        "plot.stockBOOT.object"
      ]
    },
    {
      "page": "sim.stock.data",
      "title": "Simulates SNP data according to stockSTRUCTURE model",
      "topics": [
        "sim.stock.data"
      ]
    },
    {
      "page": "stockBOOT",
      "title": "Calculates bootstrap estimates of stockSTRUCTURE model",
      "topics": [
        "stockBOOT"
      ]
    },
    {
      "page": "stockSTRUCTURE",
      "title": "Finds stock structure for sampling groups of animals",
      "topics": [
        "stockSTRUCTURE"
      ]
    }
  ],
  "_rundeps": [
    "gtools",
    "RColorBrewer",
    "Rcpp"
  ],
  "_vignettes": [
    {
      "source": "stockR.rnw",
      "filename": "stockR.pdf",
      "title": "stockR Introduction",
      "engine": "knitr::knitr",
      "headings": [],
      "created": "2023-04-26 01:58:35",
      "modified": "2023-04-26 07:16:12",
      "commits": 2
    }
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "stockr",
  "_universes": [
    "scott-foster"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.76",
      "date": "2026-06-05T10:56:05.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "0ae276886f7c2ce5410b7698afb705572ef7172a300dabd01543c26e6e34fbb4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.76",
      "date": "2026-06-05T10:55:45.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "ea2d861ebea4e5baa1427bbebf750454ff30941ebcf9eb74ba3c4142cd79e501",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.76",
      "date": "2026-06-05T10:55:48.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "a946dac005d801d4c4b826761c8593ad48196bc0af12488e1e4e73ddb3c3dd8b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.76",
      "date": "2026-06-05T10:55:47.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "ce891dc105b2957735d5bca35c6ae2ec9b377643865c9ca30bcf7c89c746ab85",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.76",
      "date": "2026-06-05T10:55:18.000Z",
      "arch": "aarch64",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "874fc8449b5d00eea5500773e54d55089c13bef6775b88918dc6dc24451f9340",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.76",
      "date": "2026-06-05T10:56:55.000Z",
      "arch": "x86_64",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "6a4f13b20e7d516ac886a184159d9cc11a2eb3a4e35bdba419be33d6e35d0360",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.76",
      "date": "2026-06-05T10:55:34.000Z",
      "arch": "aarch64",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "f9f7d2c5fec646454faead058ab95a0fdb67dea6237e864ede8ddde5c5f84f0f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.76",
      "date": "2026-06-05T10:57:47.000Z",
      "arch": "x86_64",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "d9b893bfe29a676b778023e7622746e556f9cd3a0d30fee2a7d05d934540a50f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.76",
      "date": "2026-06-05T10:55:37.000Z",
      "arch": "emscripten",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "cbc7a2d9855231c217b8b9dbdbb840d2b6c270cdc4ab4baa41d9801c28698dbb",
      "status": "success",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.76",
      "date": "2026-06-05T10:55:09.000Z",
      "arch": "x86_64",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "ffe8536756bf1249d9c4750e3ae981642077b67334209b7170b7b41c5f1f3909",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.76",
      "date": "2026-06-05T10:55:02.000Z",
      "arch": "x86_64",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "f839fb85e524b0c88a54f489d1480b8bf7d28c83449af11df62dd1282faa999c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.76",
      "date": "2026-06-05T10:55:04.000Z",
      "arch": "x86_64",
      "commit": "9953980affa103c33ca22101ba8e7baf47f87841",
      "fileid": "a1468c75404b8ed5312badc9298addbc688906031064ef907439f1d8e46a87aa",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/scott-foster/actions/runs/27010605013"
    }
  ]
}