Package: stockR 1.0.76

stockR: Identifying Stocks in Genetic Data

Provides a mixture model for clustering individuals (or sampling groups) into stocks based on their genetic profile. Here, sampling groups are individuals that are sure to come from the same stock (e.g. breeding adults or larvae). The mixture (log-)likelihood is maximised using the EM-algorithm after finding good starting values via a K-means clustering of the genetic data. Details can be found in: Foster, S. D.; Feutry, P.; Grewe, P. M.; Berry, O.; Hui, F. K. C. & Davies (2020) <doi:10.1111/1755-0998.12920>.

Authors:Scott D. Foster [aut, cre]

stockR_1.0.76.tar.gz
stockR_1.0.76.zip(r-4.7)stockR_1.0.76.zip(r-4.6)stockR_1.0.76.zip(r-4.5)
stockR_1.0.76.tgz(r-4.6-x86_64)stockR_1.0.76.tgz(r-4.6-arm64)stockR_1.0.76.tgz(r-4.5-x86_64)stockR_1.0.76.tgz(r-4.5-arm64)
stockR_1.0.76.tar.gz(r-4.7-arm64)stockR_1.0.76.tar.gz(r-4.7-x86_64)stockR_1.0.76.tar.gz(r-4.6-arm64)stockR_1.0.76.tar.gz(r-4.6-x86_64)
stockR_1.0.76.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
stockR/json (API)
NEWS

# Install 'stockR' in R:
install.packages('stockR', repos = c('https://scott-foster.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/scott-foster/stockr/issues

On CRAN:

Conda:

3.00 score 5 scripts 160 downloads 1 mentions 5 exports 3 dependencies

Last updated from:9953980aff. Checks:11 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE117
linux-devel-x86_64NOTE104
source / vignettesOK215
linux-release-arm64NOTE100
linux-release-x86_64NOTE107
macos-release-arm64NOTE97
macos-release-x86_64NOTE253
macos-oldrel-arm64NOTE78
macos-oldrel-x86_64NOTE187
windows-develNOTE96
windows-releaseNOTE79
windows-oldrelNOTE71
wasm-releaseOK81

Exports:calcFstplot.stockBOOT.objectsim.stock.datastockBOOTstockSTRUCTURE

Dependencies:gtoolsRColorBrewerRcpp

stockR Introduction

Rendered fromstockR.rnwusingknitr::knitron Jun 05 2026.

Last update: 2023-04-26
Started: 2023-04-26